Javelin
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Index
A
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B
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C
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D
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E
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F
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G
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I
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J
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K
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L
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M
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N
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R
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S
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T
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U
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V
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X
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Y
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Z
A
add_atom() (javelin.structure.Structure method)
add_modifier() (javelin.mc.MC method)
add_target() (javelin.mc.MC method)
angle() (in module javelin.grid)
append() (javelin.neighborlist.NeighborList method)
approximate (javelin.fourier.Fourier attribute)
atom1 (javelin.energies.IsingEnergy attribute)
atom2 (javelin.energies.IsingEnergy attribute)
atom_type1 (javelin.energies.LennardJonesEnergy attribute)
(javelin.energies.SpringEnergy attribute)
atom_type2 (javelin.energies.LennardJonesEnergy attribute)
(javelin.energies.SpringEnergy attribute)
atoms (javelin.structure.Structure attribute)
average (javelin.fourier.Fourier attribute)
axisAngle2Versor() (in module javelin.structure)
B
B (javelin.unitcell.UnitCell attribute)
BaseModifier (class in javelin.modifier)
bins (javelin.grid.Grid attribute)
Binv (javelin.unitcell.UnitCell attribute)
C
calc() (javelin.fourier.Fourier method)
calc_average() (javelin.fourier.Fourier method)
cartesian() (javelin.unitcell.UnitCell method)
cell (javelin.unitcell.UnitCell attribute)
cells (javelin.modifier.BaseModifier attribute)
check_parallel() (in module javelin.grid)
corners_to_vectors() (in module javelin.grid)
correlation_type (javelin.energies.Energy attribute)
create_xarray_dataarray() (in module javelin.fourier)
cycles (javelin.mc.MC attribute)
D
D (javelin.energies.LennardJonesEnergy attribute)
d() (javelin.unitcell.UnitCell method)
delete_targets() (javelin.mc.MC method)
desired (javelin.energies.LennardJonesEnergy attribute)
(javelin.energies.SpringEnergy attribute)
desired_correlation (javelin.energies.DisplacementCorrelationEnergy attribute)
(javelin.energies.IsingEnergy attribute)
DisplacementCorrelationEnergy (class in javelin.energies)
dstar() (javelin.unitcell.UnitCell method)
E
element (javelin.structure.Structure attribute)
Energy (class in javelin.energies)
energy (javelin.mccore.Target attribute)
evaluate() (javelin.energies.DisplacementCorrelationEnergy method)
(javelin.energies.Energy method)
(javelin.energies.IsingEnergy method)
(javelin.energies.LennardJonesEnergy method)
(javelin.energies.SpringEnergy method)
F
find_other_vectors() (in module javelin.grid)
Fourier (class in javelin.fourier)
fractional() (javelin.unitcell.UnitCell method)
G
G (javelin.unitcell.UnitCell attribute)
get_atom_count() (javelin.structure.Structure method)
get_atom_symbols() (javelin.structure.Structure method)
get_atom_Zs() (javelin.structure.Structure method)
get_atomic_number_symbol() (in module javelin.utils)
get_atomic_numbers() (in module javelin.utils)
(javelin.structure.Structure method)
get_average_site() (javelin.structure.Structure method)
get_average_structure() (javelin.structure.Structure method)
get_axes_names() (javelin.grid.Grid method)
get_cell() (javelin.structure.Structure method)
get_celldisp() (javelin.structure.Structure method)
get_chemical_formula() (javelin.structure.Structure method)
get_chemical_symbols() (javelin.structure.Structure method)
get_displacement_correlation() (javelin.structure.Structure method)
get_ff() (in module javelin.fourier)
get_mag_ff() (in module javelin.fourier)
get_magnetic_moments() (javelin.structure.Structure method)
get_miindex() (in module javelin.structure)
get_neighbors() (javelin.structure.Structure method)
get_occupational_correlation() (javelin.structure.Structure method)
get_positions() (in module javelin.utils)
(javelin.structure.Structure method)
get_q_meshgrid() (javelin.grid.Grid method)
get_random_cells() (javelin.modifier.BaseModifier method)
get_rotation_matrix() (in module javelin.structure)
get_rotation_matrix_from_versor() (in module javelin.structure)
get_scaled_positions() (javelin.structure.Structure method)
get_squashed_q_meshgrid() (javelin.grid.Grid method)
get_unitcell() (in module javelin.utils)
get_vector_from_points() (in module javelin.grid)
Grid (class in javelin.grid)
grid (javelin.fourier.Fourier attribute)
Gstar (javelin.unitcell.UnitCell attribute)
I
info (javelin.structure.Structure attribute)
is_structure() (in module javelin.utils)
IsingEnergy (class in javelin.energies)
iterations (javelin.mc.MC attribute)
J
J (javelin.energies.DisplacementCorrelationEnergy attribute)
(javelin.energies.IsingEnergy attribute)
javelin.energies (module)
javelin.fourier (module)
javelin.grid (module)
javelin.io (module)
javelin.mc (module)
javelin.mccore (module)
javelin.modifier (module)
javelin.neighborlist (module)
javelin.structure (module)
javelin.unitcell (module)
javelin.utils (module)
K
K (javelin.energies.SpringEnergy attribute)
L
length() (in module javelin.grid)
LennardJonesEnergy (class in javelin.energies)
ll (javelin.grid.Grid attribute)
load_HDF5_to_xarray() (in module javelin.io)
lots (javelin.fourier.Fourier attribute)
lr (javelin.grid.Grid attribute)
M
magnetic (javelin.fourier.Fourier attribute)
MC (class in javelin.mc)
mcrun() (in module javelin.mccore)
modifier (javelin.mc.MC attribute)
N
NeighborList (class in javelin.neighborlist)
neighbors (javelin.mccore.Target attribute)
norm() (in module javelin.grid)
norm1() (in module javelin.grid)
number_of_atoms (javelin.structure.Structure attribute)
number_of_cells (javelin.modifier.BaseModifier attribute)
number_of_lots (javelin.fourier.Fourier attribute)
number_of_neighbors (javelin.mccore.Target attribute)
numpy_to_vti() (in module javelin.io)
R
r1 (javelin.grid.Grid attribute)
r2 (javelin.grid.Grid attribute)
r3 (javelin.grid.Grid attribute)
radiation (javelin.fourier.Fourier attribute)
rattle() (javelin.structure.Structure method)
read_mantid_MDHisto() (in module javelin.io)
read_stru() (in module javelin.io)
read_stru_to_ase() (in module javelin.io)
recAngle() (javelin.unitcell.UnitCell method)
reciprocalCell (javelin.unitcell.UnitCell attribute)
reciprocalVolume (javelin.unitcell.UnitCell attribute)
reindex() (javelin.structure.Structure method)
repeat() (javelin.structure.Structure method)
replace_atom() (javelin.structure.Structure method)
run() (javelin.energies.Energy method)
(javelin.mc.MC method)
(javelin.modifier.BaseModifier method)
(javelin.modifier.SetDisplacementNormal method)
(javelin.modifier.SetDisplacementNormalXYZ method)
(javelin.modifier.SetDisplacementRange method)
(javelin.modifier.SetDisplacementRangeXYZ method)
(javelin.modifier.ShiftDisplacementNormal method)
(javelin.modifier.ShiftDisplacementNormalXYZ method)
(javelin.modifier.ShiftDisplacementRange method)
(javelin.modifier.ShiftDisplacementRangeXYZ method)
(javelin.modifier.Swap method)
(javelin.modifier.SwapDisplacement method)
(javelin.modifier.SwapOccupancy method)
S
save_mantid_MDHisto() (in module javelin.io)
save_xarray_to_HDF5() (in module javelin.io)
set_corners() (javelin.grid.Grid method)
SetDisplacementNormal (class in javelin.modifier)
SetDisplacementNormalXYZ (class in javelin.modifier)
SetDisplacementRange (class in javelin.modifier)
SetDisplacementRangeXYZ (class in javelin.modifier)
ShiftDisplacementNormal (class in javelin.modifier)
ShiftDisplacementNormalXYZ (class in javelin.modifier)
ShiftDisplacementRange (class in javelin.modifier)
ShiftDisplacementRangeXYZ (class in javelin.modifier)
sites (javelin.modifier.BaseModifier attribute)
SpringEnergy (class in javelin.energies)
Structure (class in javelin.structure)
Swap (class in javelin.modifier)
SwapDisplacement (class in javelin.modifier)
SwapOccupancy (class in javelin.modifier)
T
Target (class in javelin.mccore)
temperature (javelin.mc.MC attribute)
tl (javelin.grid.Grid attribute)
to_ase() (javelin.structure.Structure method)
U
ul (javelin.grid.Grid attribute)
undo_last_run() (javelin.modifier.BaseModifier method)
(javelin.modifier.SetDisplacementNormal method)
(javelin.modifier.SetDisplacementNormalXYZ method)
(javelin.modifier.SetDisplacementRange method)
(javelin.modifier.SetDisplacementRangeXYZ method)
(javelin.modifier.ShiftDisplacementNormal method)
(javelin.modifier.ShiftDisplacementNormalXYZ method)
(javelin.modifier.ShiftDisplacementRange method)
(javelin.modifier.ShiftDisplacementRangeXYZ method)
UnitCell (class in javelin.unitcell)
unitcell (javelin.structure.Structure attribute)
update_atom_symbols() (javelin.structure.Structure method)
V
v1 (javelin.grid.Grid attribute)
v1_delta (javelin.grid.Grid attribute)
v2 (javelin.grid.Grid attribute)
v2_delta (javelin.grid.Grid attribute)
v3 (javelin.grid.Grid attribute)
v3_delta (javelin.grid.Grid attribute)
values (javelin.neighborlist.NeighborList attribute)
volume (javelin.unitcell.UnitCell attribute)
X
x (javelin.structure.Structure attribute)
xyz (javelin.structure.Structure attribute)
xyz_cartn (javelin.structure.Structure attribute)
Y
y (javelin.structure.Structure attribute)
Z
z (javelin.structure.Structure attribute)
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